Tutorial

Welcome to the comprehensive CREDTOOLS (Credible Set Tools) tutorial! This guide will walk you through using CREDTOOLS for genetic fine-mapping analysis across different ancestries and cohorts.

Tutorial Structure

1. Getting Started - Learn what CREDTOOLS can do and its overall framework
2. Quick Start - Jump right in with the credtools pipeline command
3. Single Input - Fine-map a single study
4. Multi Input - Combine multiple studies
5. Advanced Topics - Custom workflows and optimization

Prerequisites

• CREDTOOLS installed (see Installation)
• Basic understanding of fine-mapping concepts
• Python 3.9 or higher

Example Data

Throughout this tutorial, we'll use example datasets included with CREDTOOLS. You can find them in the exampledata/ directory after installation.

Navigation

Use the navigation menu on the left to jump between sections, or follow the tutorial sequentially using the "Next" links at the bottom of each page.

Let's get started! 👉 Getting Started