Changelog

This page gives the short release story. For the full raw changelog, see CHANGELOG.md.

0.9.3

Documented adaptive L (--adaptive-max-causal) in more detail.

The guide now explains how CREDTOOLS changes max_causal, when it increases or decreases L, how non-convergence and purity filtering affect the retry loop, and which tools support the mechanism.

0.9.0

Added SuSiE-inf support through --tool susie_inf.

Use it when you want a SuSiE 2.0-style model that can account for a broad background component in addition to sparse signals.

0.8.0

Added SuSiE-ash support through --tool susie_ash.

This is useful for loci where a few strong effects sit on top of weaker background effects.

0.7.0

Added CARMA support through --tool carma.

CARMA is R-based and includes its own outlier-aware modeling behavior.

0.6.x

Improved convergence handling and adaptive max_causal behavior.

The main user-facing change: adaptive runs can retry more cleanly when a tool does not converge.

0.5.x

Improved QC, outlier handling, heterogeneity output, and credible set post-processing.

Highlights:

• C1b and adaptive QC options,
• cleaned loci outputs after outlier removal,
• better per-locus credible set columns,
• heterogeneity summaries from meta-analysis.

Earlier Releases

Earlier releases added MESuSiE, broad wrapper test coverage, preprocessing tests, and the current CLI structure.

Use GitHub releases or the root changelog when you need exact patch-level details.