API Reference

The command line is the main interface, but CREDTOOLS also exposes Python functions and objects. Use the API when you want to build notebooks, custom workflows, or tests around the same logic used by the CLI.

Start with:

Page	Contents
Core Objects	Locus, LocusSet, LDMatrix, summary-stat loading
Preprocessing	munging and chunking helpers
Meta-Analysis	meta-analysis functions
Quality Control	QC metrics and outlier removal
Fine-Mapping	pipeline, fine-mapping, credible sets
Plotting	plotting functions

API stability

The CLI is the stable user surface. Internal helper functions may change faster than command behavior.