`credtools meta`¶

Run meta-analysis as a standalone step.

credtools meta INPUTS OUTDIR [OPTIONS]

Common Use¶

credtools meta work/chunks/loci_list.txt work/meta \
  --meta-method meta_all \
  --threads 4

Option	Meaning	Default
`--threads`	worker count	`1`
`--meta-method`	`meta_all`, `meta_by_population`, or `no_meta`	`meta_all`
`--calculate-lambda-s`	estimate lambda-s while loading loci	off
`--skip`	reuse completed loci from a previous run	off
`--log-file`	write logs to a file	none

OUTDIR/
- loci_info.txt
- heterogeneity.txt.gz
- {locus_id}/

Use OUTDIR/loci_info.txt as the next input for qc or finemap.

Method	Behavior
`meta_all`	combine all rows for each locus
`meta_by_population`	combine rows within each population
`no_meta`	keep rows separate